From bd13ea08d43d78ee6eec4807cc43d7cb00ab5aee Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?R=C3=A9mi=20B=C3=A9dard-Couture?= <remi.bc@outlook.com>
Date: Tue, 21 Jul 2020 18:43:03 -0400
Subject: [PATCH] [edlib] Adding new port (#12490)

* Add edlib port

* Fix cmake installation

* Fixed the export error during install

* Update ports/edlib/portfile.cmake

Co-authored-by: NancyLi1013 <46708020+NancyLi1013@users.noreply.github.com>

Co-authored-by: NancyLi1013 <46708020+NancyLi1013@users.noreply.github.com>
---
 ports/edlib/CONTROL                 |  4 ++
 ports/edlib/fix-cmake-install.patch | 64 +++++++++++++++++++++++++++++
 ports/edlib/portfile.cmake          | 24 +++++++++++
 3 files changed, 92 insertions(+)
 create mode 100644 ports/edlib/CONTROL
 create mode 100644 ports/edlib/fix-cmake-install.patch
 create mode 100644 ports/edlib/portfile.cmake

diff --git a/ports/edlib/CONTROL b/ports/edlib/CONTROL
new file mode 100644
index 000000000..3a3e4b5e3
--- /dev/null
+++ b/ports/edlib/CONTROL
@@ -0,0 +1,4 @@
+Source: edlib
+Version: 1.2.6
+Homepage: https://github.com/Martinsos/edlib
+Description: Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
\ No newline at end of file
diff --git a/ports/edlib/fix-cmake-install.patch b/ports/edlib/fix-cmake-install.patch
new file mode 100644
index 000000000..8081bba78
--- /dev/null
+++ b/ports/edlib/fix-cmake-install.patch
@@ -0,0 +1,64 @@
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index 767d808..21f0cfc 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -74,14 +74,42 @@ if (NOT WIN32) # If on windows, do not build binaries that do not support window
+   target_link_libraries(edlib-aligner edlib)
+ endif()
+ 
+-
+-# Create target 'install' for installing libraries.
+-install(TARGETS edlib DESTINATION ${CMAKE_INSTALL_LIBDIR})
+-install(FILES edlib/include/edlib.h DESTINATION ${CMAKE_INSTALL_INCLUDEDIR})
+-
+ # configure and install pkg-config file
+ configure_file(
+     ${CMAKE_CURRENT_SOURCE_DIR}/edlib.pc.in
+     ${CMAKE_CURRENT_BINARY_DIR}/edlib-1.pc
+     @ONLY)
+ install(FILES ${CMAKE_CURRENT_BINARY_DIR}/edlib-1.pc DESTINATION ${CMAKE_INSTALL_LIBDIR}/pkgconfig)
++
++### Additional config for VCPKG
++include(CMakePackageConfigHelpers)
++set(EDLIB_CMAKE_DIR "lib/cmake/edlib" CACHE STRING
++  "Installation directory for cmake files, relative to ${CMAKE_INSTALL_PREFIX}.")
++set(version_config "${PROJECT_BINARY_DIR}/edlib-config-version.cmake")
++set(project_config "${PROJECT_BINARY_DIR}/edlib-config.cmake")
++set(targets_export_name edlib-targets)
++
++# Generate the version, config and target files into the build directory.
++write_basic_package_version_file(
++    ${version_config}
++    VERSION ${VERSION}
++    COMPATIBILITY AnyNewerVersion)
++configure_package_config_file(
++    ${PROJECT_SOURCE_DIR}/edlib-config.cmake.in
++    ${project_config}
++    INSTALL_DESTINATION ${EDLIB_CMAKE_DIR})
++export(TARGETS edlib NAMESPACE edlib::
++    FILE ${PROJECT_BINARY_DIR}/${targets_export_name}.cmake)
++
++# Install version, config and target files.
++install(
++    FILES ${project_config} ${version_config}
++    DESTINATION ${EDLIB_CMAKE_DIR})
++install(EXPORT ${targets_export_name} DESTINATION ${EDLIB_CMAKE_DIR}
++    NAMESPACE edlib::)
++	
++### //
++
++# Create target 'install' for installing libraries.
++install(TARGETS edlib EXPORT ${targets_export_name} DESTINATION ${CMAKE_INSTALL_LIBDIR})
++install(FILES edlib/include/edlib.h DESTINATION ${CMAKE_INSTALL_INCLUDEDIR})
+\ No newline at end of file
+diff --git a/edlib-config.cmake.in b/edlib-config.cmake.in
+new file mode 100644
+index 0000000..f2cc030
+--- /dev/null
++++ b/edlib-config.cmake.in
+@@ -0,0 +1,4 @@
++@PACKAGE_INIT@
++
++include(${CMAKE_CURRENT_LIST_DIR}/@targets_export_name@.cmake)
++check_required_components(edlib)
+\ No newline at end of file
diff --git a/ports/edlib/portfile.cmake b/ports/edlib/portfile.cmake
new file mode 100644
index 000000000..788320015
--- /dev/null
+++ b/ports/edlib/portfile.cmake
@@ -0,0 +1,24 @@
+vcpkg_check_linkage(ONLY_STATIC_LIBRARY)
+
+vcpkg_from_github(
+    OUT_SOURCE_PATH SOURCE_PATH
+    REPO Martinsos/edlib
+    REF v1.2.6
+    SHA512 75b470c1403113e5f0895b3c1bb4163e65c6e04ccf41a75297a5b4cc915a567567ebcc79f3b9ea74b5e7188adfab2eceda5ac75e2d861aef8b3fefc6d4f39200
+    HEAD_REF master
+    PATCHES
+        fix-cmake-install.patch
+)
+
+vcpkg_configure_cmake(
+    SOURCE_PATH ${SOURCE_PATH}
+    PREFER_NINJA
+)
+
+vcpkg_install_cmake()
+vcpkg_fixup_cmake_targets(CONFIG_PATH lib/cmake/edlib)
+
+file(REMOVE_RECURSE ${CURRENT_PACKAGES_DIR}/debug/include)
+
+# Handle copyright
+file(INSTALL ${SOURCE_PATH}/LICENSE DESTINATION ${CURRENT_PACKAGES_DIR}/share/${PORT} RENAME copyright)