diff --git a/Source/Core/Core/PowerPC/Interpreter/Interpreter_FloatingPoint.cpp b/Source/Core/Core/PowerPC/Interpreter/Interpreter_FloatingPoint.cpp
index 31850a1c25..26cb1edf7d 100644
--- a/Source/Core/Core/PowerPC/Interpreter/Interpreter_FloatingPoint.cpp
+++ b/Source/Core/Core/PowerPC/Interpreter/Interpreter_FloatingPoint.cpp
@@ -22,19 +22,7 @@ void Interpreter::Helper_FloatCompareOrdered(UGeckoInstruction _inst, double fa,
 {
 	int compareResult;
 
-	if (fa < fb)
-	{
-		compareResult = FPCC::FL;
-	}
-	else if (fa > fb)
-	{
-		compareResult = FPCC::FG;
-	}
-	else if (fa == fb)
-	{
-		compareResult = FPCC::FE;
-	}
-	else // NaN
+	if (IsNAN(fa) || IsNAN(fb))
 	{
 		FPSCR.FX = 1;
 		compareResult = FPCC::FU;
@@ -51,16 +39,7 @@ void Interpreter::Helper_FloatCompareOrdered(UGeckoInstruction _inst, double fa,
 			SetFPException(FPSCR_VXVC);
 		}
 	}
-
-	FPSCR.FPRF = compareResult;
-	SetCRField(_inst.CRFD, compareResult);
-}
-
-void Interpreter::Helper_FloatCompareUnordered(UGeckoInstruction _inst, double fa, double fb)
-{
-	int compareResult;
-
-	if (fa < fb)
+	else if (fa < fb)
 	{
 		compareResult = FPCC::FL;
 	}
@@ -68,21 +47,47 @@ void Interpreter::Helper_FloatCompareUnordered(UGeckoInstruction _inst, double f
 	{
 		compareResult = FPCC::FG;
 	}
-	else if (fa == fb)
+	else // Equals
 	{
 		compareResult = FPCC::FE;
 	}
-	else
+
+	// Clear and set the FPCC bits accordingly.
+	FPSCR.FPRF = (FPSCR.FPRF & ~0xF) | compareResult;
+
+	SetCRField(_inst.CRFD, compareResult);
+}
+
+void Interpreter::Helper_FloatCompareUnordered(UGeckoInstruction _inst, double fa, double fb)
+{
+	int compareResult;
+
+	if (IsNAN(fa) || IsNAN(fb))
 	{
 		compareResult = FPCC::FU;
+
 		if (IsSNAN(fa) || IsSNAN(fb))
 		{
 			FPSCR.FX = 1;
 			SetFPException(FPSCR_VXSNAN);
 		}
 	}
+	else if (fa < fb)
+	{
+		compareResult = FPCC::FL;
+	}
+	else if (fa > fb)
+	{
+		compareResult = FPCC::FG;
+	}
+	else // Equals
+	{
+		compareResult = FPCC::FE;
+	}
+
+	// Clear and set the FPCC bits accordingly.
+	FPSCR.FPRF = (FPSCR.FPRF & ~0xF) | compareResult;
 
-	FPSCR.FPRF = compareResult;
 	SetCRField(_inst.CRFD, compareResult);
 }