diff --git a/Source/Core/VideoBackends/D3D/TextureCache.cpp b/Source/Core/VideoBackends/D3D/TextureCache.cpp
index 1403027dfc..ac8271fbb5 100644
--- a/Source/Core/VideoBackends/D3D/TextureCache.cpp
+++ b/Source/Core/VideoBackends/D3D/TextureCache.cpp
@@ -93,7 +93,7 @@ void TextureCache::TCacheEntry::CopyRectangleFromTexture(
 		srcbox.right = srcrect.right;
 		srcbox.bottom = srcrect.bottom;
 		srcbox.front = 0;
-		srcbox.back = 1;
+		srcbox.back = srcentry->config.layers;
 
 		D3D::context->CopySubresourceRegion(
 			texture->GetTex(),
@@ -130,7 +130,7 @@ void TextureCache::TCacheEntry::CopyRectangleFromTexture(
 		srcentry->config.width, srcentry->config.height,
 		PixelShaderCache::GetColorCopyProgram(false),
 		VertexShaderCache::GetSimpleVertexShader(),
-		VertexShaderCache::GetSimpleInputLayout(), nullptr, 1.0, 0);
+		VertexShaderCache::GetSimpleInputLayout(), GeometryShaderCache::GetCopyGeometryShader(), 1.0, 0);
 
 	D3D::context->OMSetRenderTargets(1,
 		&FramebufferManager::GetEFBColorTexture()->GetRTV(),
diff --git a/Source/Core/VideoBackends/OGL/TextureCache.cpp b/Source/Core/VideoBackends/OGL/TextureCache.cpp
index 824d16b8c1..6cd9c50359 100644
--- a/Source/Core/VideoBackends/OGL/TextureCache.cpp
+++ b/Source/Core/VideoBackends/OGL/TextureCache.cpp
@@ -168,7 +168,7 @@ void TextureCache::TCacheEntry::CopyRectangleFromTexture(
 			0,
 			dstrect.GetWidth(),
 			dstrect.GetHeight(),
-			1);
+			srcentry->config.layers);
 		return;
 	}
 	else if (!framebuffer)
diff --git a/Source/Core/VideoCommon/TextureCacheBase.cpp b/Source/Core/VideoCommon/TextureCacheBase.cpp
index 106e9fa588..eb4b041c18 100644
--- a/Source/Core/VideoCommon/TextureCacheBase.cpp
+++ b/Source/Core/VideoCommon/TextureCacheBase.cpp
@@ -226,6 +226,7 @@ void TextureCacheBase::ScaleTextureCacheEntryTo(TextureCacheBase::TCacheEntryBas
 	TextureCacheBase::TCacheEntryConfig newconfig;
 	newconfig.width = new_width;
 	newconfig.height = new_height;
+	newconfig.layers = (*entry)->config.layers;
 	newconfig.rendertarget = true;
 
 	TCacheEntryBase* newentry = AllocateTexture(newconfig);